Determination of genetic variations in the genus Dryomys Thomas, 1906 (Rodentia: Gliridae) distributed in Turkey using NADH dehydrogenase 1 (ND1) gene

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dc.authorid0000-0002-6103-4840en_US
dc.authorid0000-0001-5370-3023en_US
dc.authorid0000-0001-5826-1615en_US
dc.contributor.authorKankılıç, Teoman
dc.contributor.authorŞeker, Perinçek Seçkinozan
dc.contributor.authorErdik, Arif Can
dc.contributor.authorKankılıç, Tolga
dc.contributor.authorEngin, Selvi
dc.contributor.authorYiğit, Nuri
dc.contributor.authorÇolak, Ercüment
dc.date.accessioned2020-11-10T12:12:31Z
dc.date.available2020-11-10T12:12:31Z
dc.date.issued2018
dc.departmentAÇÜ, Artvin Meslek Yüksekokuluen_US
dc.descriptionThis study was supported by Scientific Research Projects Coordination Unit of Nigde Omer Halisdemir University [grant number: YULTEP FEB 2015/06] and The Scientific and Technological Research Council of Turkey (TUBITAK) [grant number: 113Z822].en_US
dc.description.abstractGenetic diversity and phylogeny of Dryomys nitedula and Dryomys laniger from Turkey was described in the present study by using mitochondrial DNA NADH dehydrogenase 1 gene (ND1). Genetic variation in ND1 gene was determined by two model-based phylogenetic analyses and a network analysis revealed 27 haplotypes of D. nitedula constructing four main lineages (Thrace, Anatolia, North-eastern Anatolia and S¸avs¸at) that have non-overlapping geographic distributions and no shared haplotypes, but on the other hand, three haplotypes were detected in four samples of D. laniger from Turkey. It was determined that nucleotide diversity was low but haplotype diversity was high in D. laniger, whereas, D. nitedula has both high level of haplotype and nucleotide diversity. Characterization of Thrace lineage of D. nitedula with low nucleotide diversity and determination of the total nucleotide diversity of Anatolian lineages (Anatolia? North-eastern Anatolia?S¸avs¸at) to be approximately four times higher than that of Thrace lineage indicated that Anatolia may have served as a refuge for D. nitedula. Divergence times and high level of nucleotide differences between D. nitedula lineages showed that diversification of the lineages may have occurred before and during ice ages in Turkey, thought to be a refuge for post-glacial colonization and biodiversity resource of Europe. Additionally, estimated divergence times and calculated genetic distances yielded compatible results with the previous paleontological and genomic data for the diversification time of two species in the genus.
dc.identifier.citationKankılıç, T., Şeker, P. S., Erdik, A. C., Kankılıç, T., Selvi, E., Yiğit, N., & Çolak, E. (2018). Determination of genetic variations in the genus Dryomys Thomas, 1906 (Rodentia: Gliridae) distributed in Turkey using NADH dehydrogenase 1 (ND1) gene. Mitochondrial DNA Part A, 29(6), 933-942.en_US
dc.identifier.doi10.1080/24701394.2017.1389915
dc.identifier.endpage942en_US
dc.identifier.issue6en_US
dc.identifier.scopusqualityN/A
dc.identifier.startpage933en_US
dc.identifier.urihttps://hdl.handle.net/11494/2439
dc.identifier.volume29en_US
dc.identifier.wosqualityN/A
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.institutionauthorŞeker, Perinçek Seçkinozan
dc.language.isoenen_US
dc.publisherTaylor & Francis Incen_US
dc.relation.ispartofMitochondrial DNA Part A
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.relation.tubitak113Z822
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectDryomysen_US
dc.subjectGenetic variationen_US
dc.subjectMitochondrial DNAen_US
dc.subjectND1 geneen_US
dc.subjectTurkeyen_US
dc.titleDetermination of genetic variations in the genus Dryomys Thomas, 1906 (Rodentia: Gliridae) distributed in Turkey using NADH dehydrogenase 1 (ND1) geneen_US
dc.typeArticle

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